About Me

Dr. Gopakumar G Assistant Professor
Department of Computer Science and Engineering
National Institute of Technology Calicut
Kozhikode, Kerala

Experience: Assistant Professor CSED NIT Calicut-11 years teaching experience,

Education: University of Kerala Thiruvananthapuram, Kerala Ph. D 2013 – in Bioinformatics,
Cochin University of Science & Technology Cochin, Kerala M. Tech 8.93CGPA;First rank; 2003 – in Software Engineering
Cochin University of Science & Technology Cochin, Kerala B. Tech 82.01%;Distinction; 2000 – in Computer Engineering

Thesis Guided/Publications: UG/PG thesis: 20 and 25
Ph. D thesis: 2 completed (Co-Guide), 5 ongoing
Int. Journals: 5 (1 SCI & 4 Scopus indexed)
Int. Conferences: 10 (5 Scopus indexed)

Details of Selected Publications: GPURFSCREEN: a GPU based virtual screening tool using random forest classifier - Journal of Cheminformatics (SCI indexed)
• An optimal seed based compression algorithm for DNA sequences - Advances in Bioinformatics (Scopus indexed)
• GEN-SNiP - An online tool to find polymorphisms in a genome - In silico Biology (Scopus indexed)
• Fractality of numeric and symbolic sequences - IEEE Potentials (Scopus indexed)
• Biolets: Statistical approach to biological random sequence generator - Malaysian Jour. of Comput. Science (Scopus indexed)
• Major Conferences: 2016 IEEE IPDPS, IEEE TENCON 2015, ACM-SAC 2018

Ph. D - Completed (Co-Guide):
• GPU Based Virtual Screening Techniques for Faster Drug Discovery
• Seed Based DNA Sequence Compression With Tandem Repeat Elimination

Ph. D-Ongoing/Research Focus:
• Heterogeneous Information Network Model for the Functional Analysis of Cancer-related LncRNAs
• Computational Analysis of Long non-coding RNA Functional Signatures using Principles of Topic Modeling
• Multi-layer interaction network model for functional module detection in biological networks

Ph. D-Ongoing/Research Focus:
Heterogeneous Information Network Model for the Functional Analysis of Cancer-related LncRNAs
• Computational Analysis of Long non-coding RNA Functional Signatures using Principles of Topic Modeling
• Multi-layer interaction network model for functional module detection in biological networks

Ph. D-Ongoing/Research Focus:
Two weeks training on Windows Server, SQL Server and Hardware Maintenance to the officials of India Post, Govt. of India - Rs. 4.5 Lakhs - Apr/May 2013
• Faculty Development Programme on Bioinformatics Algorithms, Databases and Tools - 4-8/6/2012
• National workshop on Big data analytics and Bioinformatics - 16-18/02/2015
• Four day Workshop on Aakash Android Application Programming for Students of NIT Calicut - 23-24/02/2013 & 2-3/3/2013
• ISTE Workshop on Aakash for Education - 10-11/11/2012

Administrative responsibilities held:
.Department level purchase coordinator
• Department level TEQIP coordinator
• Faculty in charge of Big Data and Bioinformatics Laboratory
• Faculty in charge of Campus Networking Centre
• Member in the institute website maintenance team

Home